Google Scholar Page
The listing here includes different sections for research articles, reviews, books (chapters) and other publications.
Research Articles:
32) A molecular rotor FLIM probe reveals dynamic coupling between mitochondrial inner membrane fluidity and cellular respiration
G Singh, G George, SO Raja, P Kandaswamy, M Kumar, S Thutupalli, S Laxman, A Gulyani
Proc. Nat. Acad. Sci. (2023)
31) Multispecies autocatalytic RNA reaction networks in coacervates
S Ameta, M Kumar, N Chakraborty, YJ Matsubara, D Gandavadi, S Thutupalli
Communications Chemistry 6 (1), 91 (2023)
30) Two-component molecular motor driven by a GTPase cycle
A Singh, JA Soler, J Lauer, SW Grill, M Jahnel, M Zerial, S Thutupalli
Nature Physics, 1-8 (2023)
Preprint: biorxiv:10.1101/2022.07.18.500463v1 (2022)
29) Emergent rigidity in chemically self-interacting flexible active polymers
M Kumar, A Murali, AG Subramaniam, R Singh, S Thutupalli
Preprint: arXiv:2303.10742 (2023)
28) Dynamical demographic phases explain how population growth and mutation control the evolutionary impact of bottlenecks
E Crosato, JN Philippson, S Thutupalli, RG Morris
Physical Review Research, 5 (1), 013093 (2023)
Preprint: arxiv:2202.08394 (2022)
Preprint: biorxiv:2022.07.28.501945v1 (2022)
27) Constrained dynamics of oligonucleotides in phase-separated droplets
A Singh, S Thutupalli, M Kumar, S Ameta
Preprint: bioRxiv, 2023.02. 04.527127 (2023)
26) Robustness of compositional heredity to the growth and division dynamics of prebiotic compartments
YJ Matsubara, S Ameta, S Thutupalli, P Nghe, S Krishna
Preprint: arXiv, arXiv:2211.03155 (2022)
25) Irregular particle morphology and membrane rupture facilitate ion gradients in the lumen of phagosomes
Biophysical Reports, 2 (3), 100069 (2022)
MV Baranov, M Ioannidis, S Balahsioui, A Boersma, R de Boer, M Kumar, M Niwa, T Hirayama, Q Zhou, TM Hopkins, P Grijpstra, S Thutupalli, S Sacanna, Gvd Bogaart
24) Active ploughing through a compressible viscoelastic fluid
Nature Communications, 13 (1), 4533 (2022)
Preprint: arXiv, arXiv:2109.10438 (2021)
JP Banerjee, R Mandal, DS Banerjee, S Thutupalli, M Rao
23) Depletion-Force Measurements Get Active
S Thutupalli
Physics 15, 113 (2022)
22) Harnessing confinement and driving to tune active particle dynamics
Physical Review Research, 4 (1), 013136 (2022)
Preprint: arXiv, arxiv:2101.00571 (2021)
A Murali, P Dolai, A Krishna, K Vijay Kumar, S Thutupalli
22) Assembling anisotropic colloids using curvature-mediated lipid sorting
M Kumar, A Singh, B Del Secco, MV Baranov, G van den Bogaart, S Sacanna, S Thutupalli
Soft Matter 18 (9), 1757-1766 (2022)
21) Whirligig beetles as corralled active Brownian particles
J R Soc.Int. 18, 20210114 (2021)
Preprint: arXiv, arXiv:2104.03080 (2021)
H Devereux, C Twomey, MS Turner, S Thutupalli
20) The impact of mistranslation on phenotypic variability and fitness
Evolution, 2 (2021)
Preprint: BiorXiv (2020)
Samhita L, Raval PK, Stephenson G, Thutupalli S, Agashe D
19) In vivo multi-dimensional information-keeping in Halobacterium salinarum
Preprint: BiorXiv (2020)
Davis J, Bisson-Filho A, Kadyrov D, De Kort T, Biamonte M, Thattai M, Thutupalli S, Church G
18) A self-driven phase transition drives Myxococcus xanthus aggregation
Phys. Rev. Lett. 122, 248102 (2019)
Preprint: arXiv:1709.06012 (2017)
Liu G, Patch A, Bahar F, Yllanes D, Welch RD, Marchetti MC, Thutupalli S, Shaevitz JW
17) Flow-induced Phase Separation of active particles is controlled by boundary conditions
Proc. Nat. Acad. Sci., 115 (21) 5403-5408 (2018)
Preprint: arXiv:1710.10300 (2017)
Thutupalli S, Geyer D, Singh R, Adhikari R, Stone HA
16) Farming and public goods production in C.elegans populations
Proc. Nat. Acad. Sci., 114 (9), 2289–2294 (2017)
Thutupalli S, Uppaluri S, Constable GWA, Levin SA, Stone HA, Tarnita CE , Brangwynne CP
15) Intermittent chaotic chimeras in coupled rotators
Phys. Rev. E (Rapid Communications), 92 (3), 030901 2015
Olmi S, Martens E, Thutupalli S, Torcini A
14) Directional reversals enable Myxococcus xanthus cells to produce collective one-dimensional streams during fruiting-body formation
J R Soc. Int., 12 (109), 20150049, 2015
Thutupalli S, Sun M, Bunyak F, Palaniappan K, Shaevitz J
13) Interfacial mechanisms in active emulsions
Soft Matter, 10 (36), 7008-7022, 2014
Herminghaus S, Maass C, Kruger C, Thutupalli S, Goehring L, Bahr C
12) Mode coupling of phonons in one-dimensional microfluidic crystals
New J Phys., 16, 063029, 2014
Fleury J-B, Schiller U, Thutupalli S, Gompper G, Seemann R
11) A versatile class of cell surface directional motors gives rise to gliding motility and sporulation in Myxococcus xanthus
PLoS Biology 11(12): e1001728, 2013
Wartel M, Ducret A, Thutupalli S, Czerwinski F, Le Gall A-V, Mauriello EMF, Bergam P, Brun Y, Shaevitz J, Mignot T
10) Myelin Structures Formed by Thermotropic Smectic Liquid Crystals
Langmuir, 29 (50), pp 15682- 15688, 2013
Peddireddy K, Kumar P, Thutupalli S, Herminghaus S, Bahr C
9) Lasing and waveguiding in smectic A liquid crystal optical fibers
Optics Letters, Vol. 21, Issue 25, pp. 30233-30242, 2013
Peddireddy K, Jampani Chowdary VSR , Thutupalli S, Herminghaus S, Bahr C, Musevic I
8) Chimera states in mechanical oscillator networks
Proc. Nat. Acad. Sci., 110(26) 10563-10567, 2013
Martens E, Thutupalli S, Fourriere A, Hallatschek O
7) Tuning active emulsion dynamics using surfactants and topology
Eur. Phys. J E, Invited Article, 36: 91, (2013)
Thutupalli S, Herminghaus S
6) Why can artificial membranes be fabricated so rapidly in microfluidics?
Chemical Communications, 49, 1443-1445, 2013
Thutupalli S, Fleury J-B, Steinberger A, Herminghaus S, Seemann R
5) Solubilization of Thermotropic Liquid Crystal Compounds in Aqueous Surfactant Solutions
Langmuir, 28(34), 12426-431, 2012 (Letter)
Peddireddy K, Kumar P, Thutupalli S, Herminghaus S, Bahr C
4) X-ray propagation imaging of a lipid bilayer in solution
Soft Matter, 8, 4595-4601, 2012
Beerlink A, Thutupalli S, Mell M, Bartels M, Cloetens P, Herminghaus P, Salditt T
3) Swarming behavior of simple model squirmers
New Journal of Physics (Fast Track), 13, 073021, 2011
Thutupalli S, Seemann R, Herminghaus S
2) Synaptotagmin-1 may be a distance regulator acting upstream of SNARE nucleation
Nat. Struct. & Mol. Biol., 18, 2011
van den Bogaart G, Thutupalli S, Risselada JH, Meyenberg K, Holt M, Riedel D, Diederichsen U, Herminghaus S, Grubmuller H, Jahn R
1) Bilayer membranes in micro-fluidics: from gel emulsions to soft functional devices
Soft Matter, 7, 1312-1320, 2011
Thutupalli S, Seemann R, Herminghaus S
Perspectives/Reviews:
3) Physical bioenergetics: Energy fluxes, budgets, and constraints in cells
Proc. Nat. Acad. Sci. 118 (26) e2026786118 (2021)
X Yang et.al.
2) Self-reproduction and Darwinian evolution in autocatalytic chemical reaction systems
Life, 11(4), 308 (2021)
S Ameta, Y Matsubara, N Chakraborty, S Krishna, S Thutupalli
1) Modulation of immune responses by particle size and shape
Frontiers in Immunology, 11, 3854 (2021)
MV Baranov, M Kumar, S Sacanna, S Thutupalli, G van den Bogaart
2) Towards Autonomous Soft Matter Systems
Springer (Heidelberg), ISBN: 978-3-319-00734-2, 2014
Shashi Thutupalli
1) Hydrodynamics mediated collective motions in populations of microdroplets
Invited Chapter, Engineering of Chemical Complexity II (eds. A.S. Mikhailov and G.Ertl), World Scientific (Singapore), 2014
Shashi Thutupalli, Jean-Baptiste Fleury, Ulf Schiller, Gerhard Gompper, Stephan Herminghaus and Ralf Seemann
Books / Book Chapters:
2) Towards Autonomous Soft Matter Systems
Springer (Heidelberg), ISBN: 978-3-319-00734-2, 2014
Shashi Thutupalli
1) Hydrodynamics mediated collective motions in populations of microdroplets
Invited Chapter, Engineering of Chemical Complexity II (eds. A.S. Mikhailov and G.Ertl), World Scientific (Singapore), 2014
Shashi Thutupalli, Jean-Baptiste Fleury, Ulf Schiller, Gerhard Gompper, Stephan Herminghaus and Ralf Seemann
Others:
3) Segmentation and analysis of mother machine data: SAM
BiorXiv (2020)
Banerjee D, Stephenson G, Das SG
2) Microfluidics: For a few drops more
Nat. Phys., 10, 87–88, 2014
Stone H, Thutupalli S
1) A mechanical chimera
Physics Today, Backscatter, October 2013
Thutupalli S, Martens E
The listing here includes different sections for research articles, reviews, books (chapters) and other publications.
Research Articles:
32) A molecular rotor FLIM probe reveals dynamic coupling between mitochondrial inner membrane fluidity and cellular respiration
G Singh, G George, SO Raja, P Kandaswamy, M Kumar, S Thutupalli, S Laxman, A Gulyani
Proc. Nat. Acad. Sci. (2023)
31) Multispecies autocatalytic RNA reaction networks in coacervates
S Ameta, M Kumar, N Chakraborty, YJ Matsubara, D Gandavadi, S Thutupalli
Communications Chemistry 6 (1), 91 (2023)
30) Two-component molecular motor driven by a GTPase cycle
A Singh, JA Soler, J Lauer, SW Grill, M Jahnel, M Zerial, S Thutupalli
Nature Physics, 1-8 (2023)
Preprint: biorxiv:10.1101/2022.07.18.500463v1 (2022)
29) Emergent rigidity in chemically self-interacting flexible active polymers
M Kumar, A Murali, AG Subramaniam, R Singh, S Thutupalli
Preprint: arXiv:2303.10742 (2023)
28) Dynamical demographic phases explain how population growth and mutation control the evolutionary impact of bottlenecks
E Crosato, JN Philippson, S Thutupalli, RG Morris
Physical Review Research, 5 (1), 013093 (2023)
Preprint: arxiv:2202.08394 (2022)
Preprint: biorxiv:2022.07.28.501945v1 (2022)
27) Constrained dynamics of oligonucleotides in phase-separated droplets
A Singh, S Thutupalli, M Kumar, S Ameta
Preprint: bioRxiv, 2023.02. 04.527127 (2023)
26) Robustness of compositional heredity to the growth and division dynamics of prebiotic compartments
YJ Matsubara, S Ameta, S Thutupalli, P Nghe, S Krishna
Preprint: arXiv, arXiv:2211.03155 (2022)
25) Irregular particle morphology and membrane rupture facilitate ion gradients in the lumen of phagosomes
Biophysical Reports, 2 (3), 100069 (2022)
MV Baranov, M Ioannidis, S Balahsioui, A Boersma, R de Boer, M Kumar, M Niwa, T Hirayama, Q Zhou, TM Hopkins, P Grijpstra, S Thutupalli, S Sacanna, Gvd Bogaart
24) Active ploughing through a compressible viscoelastic fluid
Nature Communications, 13 (1), 4533 (2022)
Preprint: arXiv, arXiv:2109.10438 (2021)
JP Banerjee, R Mandal, DS Banerjee, S Thutupalli, M Rao
23) Depletion-Force Measurements Get Active
S Thutupalli
Physics 15, 113 (2022)
22) Harnessing confinement and driving to tune active particle dynamics
Physical Review Research, 4 (1), 013136 (2022)
Preprint: arXiv, arxiv:2101.00571 (2021)
A Murali, P Dolai, A Krishna, K Vijay Kumar, S Thutupalli
22) Assembling anisotropic colloids using curvature-mediated lipid sorting
M Kumar, A Singh, B Del Secco, MV Baranov, G van den Bogaart, S Sacanna, S Thutupalli
Soft Matter 18 (9), 1757-1766 (2022)
21) Whirligig beetles as corralled active Brownian particles
J R Soc.Int. 18, 20210114 (2021)
Preprint: arXiv, arXiv:2104.03080 (2021)
H Devereux, C Twomey, MS Turner, S Thutupalli
20) The impact of mistranslation on phenotypic variability and fitness
Evolution, 2 (2021)
Preprint: BiorXiv (2020)
Samhita L, Raval PK, Stephenson G, Thutupalli S, Agashe D
19) In vivo multi-dimensional information-keeping in Halobacterium salinarum
Preprint: BiorXiv (2020)
Davis J, Bisson-Filho A, Kadyrov D, De Kort T, Biamonte M, Thattai M, Thutupalli S, Church G
18) A self-driven phase transition drives Myxococcus xanthus aggregation
Phys. Rev. Lett. 122, 248102 (2019)
Preprint: arXiv:1709.06012 (2017)
Liu G, Patch A, Bahar F, Yllanes D, Welch RD, Marchetti MC, Thutupalli S, Shaevitz JW
17) Flow-induced Phase Separation of active particles is controlled by boundary conditions
Proc. Nat. Acad. Sci., 115 (21) 5403-5408 (2018)
Preprint: arXiv:1710.10300 (2017)
Thutupalli S, Geyer D, Singh R, Adhikari R, Stone HA
16) Farming and public goods production in C.elegans populations
Proc. Nat. Acad. Sci., 114 (9), 2289–2294 (2017)
Thutupalli S, Uppaluri S, Constable GWA, Levin SA, Stone HA, Tarnita CE , Brangwynne CP
15) Intermittent chaotic chimeras in coupled rotators
Phys. Rev. E (Rapid Communications), 92 (3), 030901 2015
Olmi S, Martens E, Thutupalli S, Torcini A
14) Directional reversals enable Myxococcus xanthus cells to produce collective one-dimensional streams during fruiting-body formation
J R Soc. Int., 12 (109), 20150049, 2015
Thutupalli S, Sun M, Bunyak F, Palaniappan K, Shaevitz J
13) Interfacial mechanisms in active emulsions
Soft Matter, 10 (36), 7008-7022, 2014
Herminghaus S, Maass C, Kruger C, Thutupalli S, Goehring L, Bahr C
12) Mode coupling of phonons in one-dimensional microfluidic crystals
New J Phys., 16, 063029, 2014
Fleury J-B, Schiller U, Thutupalli S, Gompper G, Seemann R
11) A versatile class of cell surface directional motors gives rise to gliding motility and sporulation in Myxococcus xanthus
PLoS Biology 11(12): e1001728, 2013
Wartel M, Ducret A, Thutupalli S, Czerwinski F, Le Gall A-V, Mauriello EMF, Bergam P, Brun Y, Shaevitz J, Mignot T
10) Myelin Structures Formed by Thermotropic Smectic Liquid Crystals
Langmuir, 29 (50), pp 15682- 15688, 2013
Peddireddy K, Kumar P, Thutupalli S, Herminghaus S, Bahr C
9) Lasing and waveguiding in smectic A liquid crystal optical fibers
Optics Letters, Vol. 21, Issue 25, pp. 30233-30242, 2013
Peddireddy K, Jampani Chowdary VSR , Thutupalli S, Herminghaus S, Bahr C, Musevic I
8) Chimera states in mechanical oscillator networks
Proc. Nat. Acad. Sci., 110(26) 10563-10567, 2013
Martens E, Thutupalli S, Fourriere A, Hallatschek O
7) Tuning active emulsion dynamics using surfactants and topology
Eur. Phys. J E, Invited Article, 36: 91, (2013)
Thutupalli S, Herminghaus S
6) Why can artificial membranes be fabricated so rapidly in microfluidics?
Chemical Communications, 49, 1443-1445, 2013
Thutupalli S, Fleury J-B, Steinberger A, Herminghaus S, Seemann R
5) Solubilization of Thermotropic Liquid Crystal Compounds in Aqueous Surfactant Solutions
Langmuir, 28(34), 12426-431, 2012 (Letter)
Peddireddy K, Kumar P, Thutupalli S, Herminghaus S, Bahr C
4) X-ray propagation imaging of a lipid bilayer in solution
Soft Matter, 8, 4595-4601, 2012
Beerlink A, Thutupalli S, Mell M, Bartels M, Cloetens P, Herminghaus P, Salditt T
3) Swarming behavior of simple model squirmers
New Journal of Physics (Fast Track), 13, 073021, 2011
Thutupalli S, Seemann R, Herminghaus S
2) Synaptotagmin-1 may be a distance regulator acting upstream of SNARE nucleation
Nat. Struct. & Mol. Biol., 18, 2011
van den Bogaart G, Thutupalli S, Risselada JH, Meyenberg K, Holt M, Riedel D, Diederichsen U, Herminghaus S, Grubmuller H, Jahn R
1) Bilayer membranes in micro-fluidics: from gel emulsions to soft functional devices
Soft Matter, 7, 1312-1320, 2011
Thutupalli S, Seemann R, Herminghaus S
Perspectives/Reviews:
3) Physical bioenergetics: Energy fluxes, budgets, and constraints in cells
Proc. Nat. Acad. Sci. 118 (26) e2026786118 (2021)
X Yang et.al.
2) Self-reproduction and Darwinian evolution in autocatalytic chemical reaction systems
Life, 11(4), 308 (2021)
S Ameta, Y Matsubara, N Chakraborty, S Krishna, S Thutupalli
1) Modulation of immune responses by particle size and shape
Frontiers in Immunology, 11, 3854 (2021)
MV Baranov, M Kumar, S Sacanna, S Thutupalli, G van den Bogaart
2) Towards Autonomous Soft Matter Systems
Springer (Heidelberg), ISBN: 978-3-319-00734-2, 2014
Shashi Thutupalli
1) Hydrodynamics mediated collective motions in populations of microdroplets
Invited Chapter, Engineering of Chemical Complexity II (eds. A.S. Mikhailov and G.Ertl), World Scientific (Singapore), 2014
Shashi Thutupalli, Jean-Baptiste Fleury, Ulf Schiller, Gerhard Gompper, Stephan Herminghaus and Ralf Seemann
Books / Book Chapters:
2) Towards Autonomous Soft Matter Systems
Springer (Heidelberg), ISBN: 978-3-319-00734-2, 2014
Shashi Thutupalli
1) Hydrodynamics mediated collective motions in populations of microdroplets
Invited Chapter, Engineering of Chemical Complexity II (eds. A.S. Mikhailov and G.Ertl), World Scientific (Singapore), 2014
Shashi Thutupalli, Jean-Baptiste Fleury, Ulf Schiller, Gerhard Gompper, Stephan Herminghaus and Ralf Seemann
Others:
3) Segmentation and analysis of mother machine data: SAM
BiorXiv (2020)
Banerjee D, Stephenson G, Das SG
2) Microfluidics: For a few drops more
Nat. Phys., 10, 87–88, 2014
Stone H, Thutupalli S
1) A mechanical chimera
Physics Today, Backscatter, October 2013
Thutupalli S, Martens E